Summary:
  1. Noise in position 1 is fixed by soldering or inserting a copper strip along the right edge.
  2. Noise in position 2 is improved by covering a hole near position 2 with a grounded copper patch
  3. Noise in position 6 went down to around 20 counts for no apparent reason, although pictures indicate it is due to a copper strip along right (!?) edge.
  4. Noise in position 8 is reduced due to already mentioned factors: covering a hole near position 2 and soldering a copper strip along the right edge


June 17. Inserting a copper strip along the right edge of the board improves position 1:



June 18. Removing caps around position 6 has no effect:



June 18. Removing test pulse components around positions 1, 2, 8 has no effect:



June 18. Removing a capacitor located next to a hole near position 2 has a mixed effect on position 8:



June 18. Inserting a copper strip along the right edge improves significantly position 1 and fixes some problems in position 8:



June 21. Soldering a copper strip along the right edge has the same effect as just inserting a copper strip (position 1 improved):



June 21. Soldering copper patches along some of the holes near positions 2, 6, 8 improves noise near positions 2, 5, 6, but has mixed effect on position 8


June 23. This plot combines the initial results from June 17 and final results from June 23. This is the best I could achieve in reducing clock noise in positions 1, 2, 6, 8.



June 23. Finally, here is min-max noise of 1bl measured at CERN. They also have extra noise in positions 2, 6, 8: